Papers - Tomita, Masaru
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Sustained MAPK activation is dependent on continual NGF receptor regeneration
Qiu, D., Mao, L., Kikuchi, S. and Tomita, M.
Development, Growth & Differentiation 46 ( 5 ) 393 - 403 2004.06
Research paper (conference, symposium, etc.), Joint Work, Accepted, ISSN 00121592
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Kitamura-Abe S., Itoh H., Washio T., Tsutsumi A., Tomita M.
Journal of Bioinformatics and Computational Biology 2 ( 2 ) 309 - 331 2004.06
ISSN 02197200
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Application of capillary electrophoresis-mass spectrometry to syntheitc in vitro glycolysis studies
Itoh A., Ohashi Y., Soga T., Mori H., Nishioka T. and Tomita M.
Electrophoresis 25 1996-2002 2004
Research paper (scientific journal), Joint Work
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Simultaneous determination of the main metabolites in rice leaves using capillary electrophoresis mass spectrometry and capillary electrophoresis diode array detection
Sato, S., Soga, T., Nishioka, T. and Tomita, M.
Plant Journal 40 ( 1 ) 151-163 2004
Research paper (scientific journal), Joint Work, Accepted
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A general computational model of mitochondrial metabolism in a whole organelle scale
Yugi K., Tomita M.
Bioinformatics 20 ( 20 ) 1795-1796 - 1796 2004
Research paper (scientific journal), Joint Work, Accepted, ISSN 13674803
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Position-specific expression of Hox genes along the gastrointestinal tract
Yahagi N, Kosaki R, Ito T, Mitsuhashi T, Shimada H, Tomita M, Takahashi T, and Kosaki K
Congenital Anomalies 44 ( 1 ) 18-26 - 26 2004
Research paper (scientific journal), Joint Work, Accepted, ISSN 09143505
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A multi-algorithm, multi-timescale method for cell simulation
Takahashi, K., Kaizu, K., Bin, H., Tomita, M
Bioinformatics 20 ( 4 ) 538-546 - 546 2004
Research paper (scientific journal), Joint Work, Accepted, ISSN 13674803
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Otani, N., Yanagawa, H., Tomita, M. and Itaya, M
Biochemical Journal 381 ( 3 ) 795-802 - 802 2004
Research paper (scientific journal), Joint Work, Accepted, ISSN 02646021
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Toward large-scale modeling of the microbial cell for computer simulation
Ishii, N., Robert, M. Nakayama, Y., Kanai, A. and Tomita, M
Journal of Biotechnology 113 ( 1-3 ) 281-294 - 294 2004
Research paper (scientific journal), Joint Work, Accepted, ISSN 01681656
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The 'weighted sum of relative entropy': a new index for synonymous codon usage bias
Suzuki, H., Saito, R. and Tomita, M
GENE 335 ( 335 ) 19-23 - 23 2004
Research paper (scientific journal), Joint Work, Accepted, ISSN 03781119
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Qualitative and quantitative analysis of amino acids by capillary electrophresis Electrospray ionization tandem mass spectrometry
Soga, T., Kakazu Yuji, Robert, M., Tomita, M. and Nishioka, T
Electrophoresis ( 25 ) 1964-1972 2004
Research paper (scientific journal), Joint Work, Accepted
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On dynamics of overlapping genes in bacterial genomes
Fukuda Y., Nakayama Y., Tomita M.
Gene 323 ( 1-2 ) 181 - 187 2003.12
ISSN 03781119
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Fujimori S, Washio T, Higo K, Ohtomo Y, Murakami K, Matsubara K, Kawai J, Carninci P, Hayashizaki Y, Kikuchi S, Tomita M
FEBS LETTERS 554 ( 1-2 ) 17 - 22 2003.11
Research paper (scientific journal), Single Work, ISSN 0014-5793
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Kikuchi S., Fujimoto K., Kitagawa N., Fuchikawa T., Abe M., Oka K., Takei K., Tomita M.
Neural Networks 16 ( 9 ) 1389 - 1398 2003.11
ISSN 08936080
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E-cell 2: Multi-platform E-Cell simulation system
Takahashi K, Ishikawa N, Sadamoto Y, Sasamoto H, Ohta S, Shiozawa A, Miyoshi F, Naito Y, Nakayama Y, Tomita M
BIOINFORMATICS 19 ( 13 ) 1727 - 1729 2003.09
Research paper (scientific journal), Single Work, ISSN 1367-4803
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Comparative study of translation termination sites and release factors (RF1 and RF2) in procaryotes
Ozawa Y., Saito R., Washio T., Tomita M.
Journal of Molecular Evolution 56 ( 6 ) 665 - 672 2003.06
ISSN 00222844
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Dynamics modeling of genetic networks using genetic algorithm and S-system
Kikuchi S., Tominaga D., Arita M., Takahashi K., Tomita M.
Bioinformatics 19 ( 5 ) 643 - 650 2003.03
ISSN 13674803
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E-cell simulation system and its application to the modeling of circadian rhythm
Miyoshi F, Nakayama Y, Tomita M
Seikagaku 75 ( 1 ) 5-16 - 16 2003.01
Research paper (scientific journal), Single Work, ISSN 0037-1017
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G-language Genome Analysis Environment: a workbench for nucleotide sequence data mining
Arakawa, K., Mori, K., Ikeda, K., Matsuzaki, T., Kobayashi, Y., and Tomita, M.
Bioinformatics 19 ( 2 ) 305 - 306 2003
Research paper (scientific journal), Joint Work, ISSN 13674803
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M. Hucka, A. Finney, H. M. Sauro, H. Bolouri, J. C. Doyle, H. Kitano, A. P. Arkin, B. J. Bornstein, D. Bray, A. Cornish-Bowden, A. A. Cuellar, S. Dronov, E. D. Gilles, M. Ginkel, V. Gor, I. I. Goryanin, W. J. Hedley, T. C. Hodgman, J.-H. Hofmeyr, P. J. Hunter, N. S. Juty, J. L. Kasberger, A.Kremling, U. Kummer, N. Le Novere, L. M. Loew, D. Lucio, P. Mendes, E. D.Mjolsness, Y. Nakayama, M. R. Nelson, P. F. Nielsen, T. Sakurada, J. C.Schaff, B. E. Shapiro, T. S. Shimizu, H. D. Spence, J. Stelling, K.Takahashi, M. Tomita, J. Wagner, J. Wang
Bioinformatics 19 ( 4 ) 524 - 531 2003
Research paper (scientific journal), Joint Work, Accepted, ISSN 13674803