Papers - Tomita, Masaru
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A problem in multivariate analysis of codon usage data and a possible solution
Suzuki H., Saito R., Tomita M.
FEBS Letters 579 ( 28 ) 6499 - 6504 2005.11
ISSN 00145793
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Hoque M., Ushiyama H., Tomita M., Shimizu K.
Biochemical Engineering Journal 26 ( 1 ) 38 - 49 2005.11
ISSN 1369703X
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A comprehensive software suite for the analysis of cDNAs
Arakawa K., Suzuki H., Fujishima K., Fujimoto K., Ueda S., Matsui M., Tomita M.
Genomics, Proteomics and Bioinformatics 3 ( 3 ) 179 - 188 2005.08
ISSN 16720229
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All systems go: launching cell simulation fueled by integrated experimental biology data
Arita, M; Robert, M; Tomita, M
Current Opinion in Biotechnology 16 ( 3 ) 344-349 - 349 2005.06
Research paper (scientific journal), Joint Work, ISSN 09581669
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Ohtani, Naoto Saito, Natsumi Tomita, Masaru Itaya, Mitsuhiro Itoh, Aya
FEBS Journal 272 ( 11 ) 2828-2837 - 2837 2005.06
Research paper (scientific journal), Joint Work, ISSN 1742464X
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Space in systems biology of signaling pathways--towards intracellular molecular crowding in silico
Takahashi, Kouichi Arjunan, Satya Nanda Vel Tomita, Masaru
Febs Letters 579 ( 8 ) 1783-1788 2005.03
Research paper (scientific journal), Joint Work, ISSN 00145793
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GC-compositional strand bias around transcription start sites in plants and fungi
Fujimori S., Washio T., Tomita M.
BMC Genomics 6 2005.02
ISSN 14712164
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Sugimoto M., Kikuchi S., Arita M., Soga T., Nishioka T., Tomita M.
Analytical Chemistry 77 ( 1 ) 78 - 84 2005.01
ISSN 00032700
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A microarray data-based semi-kinetic method for predicting quantitative dynamics of genetic networks
Yugi K, Nakayama Y, Kojima S, Kitayama T, Tomita M.
BMC Bioinformatics 6 ( 299 ) 2005
Research paper (scientific journal), Joint Work, ISSN 14712105
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Reverse engineering of biochemical equations from time-course data by means of genetic programming
Sugimoto M., Kikuchi S., Tomita M.
Biosystems 80 ( 2 ) 155 - 164 2005
Research paper (scientific journal), Joint Work, ISSN 03032647
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In silico diagnosis of inherently inhibited gene expression focusing on initial codon combinations
Ohashi Y., Yamashiro A., Washio T., Ishii N., Ohshima H., Michishita T., Tomita M., Itaya M.
Gene 347 ( 1 ) 11 - 19 2005
Research paper (scientific journal), Joint Work, ISSN 03781119
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Kitagawa, Noriyuki ; Washio, Takanori ; Kosugi, Shunichi ; Yamashita, Tomoya ; Higashi, Kenji ; Yanagawa, Hiroshi ; Higo, Kenichi ; Satoh, Koji ; Ohtomo, Yasuhiro ; Sunako, Tomomi ; Murakami, Kazuo ; Matsubara, Kenichi ; Kawai, Jun ; Carninci, Piero ; Hayashizaki, Yoshihide ; Kikuchi, Shoshi ; Tomita, Masaru
Bioinformatics 21 ( 9 ) 1758-1763 - 1763 2005
Research paper (scientific journal), Joint Work, ISSN 13674803
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Hybrid dynamic/static method for large-scale simulation of metabolism
Yugi, K., Nakayama, Y., Kinoshita, A., and Tomita, M.
Theoretical Biology and Medical Modeling 2 ( 42 ) 2005
Research paper (scientific journal), Joint Work, ISSN 17424682
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KEGG-based pathway visualization tool for complex omics data
Arakawa, K., Kono, N., Yamada, Y. and Tomita, M.
In Silico Biology 5 ( 0039 ) 419 - 423 2005
Research paper (scientific journal), Joint Work, ISSN 13866338
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Metabolome Analysis and Metabolic Simulation
Ishii N., Soga T., Nishioka T. and Tomita M.
Metabolomics 1 ( 1 ) 29-37 - 37 2005
Research paper (scientific journal), Joint Work, ISSN 15733882
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Nakayama Y., Kinoshita A., Tomita M.
Theoretical Biology and Medical Modeling 2 ( 18 ) 2005
Research paper (scientific journal), Joint Work, ISSN 17424682
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Cleavage of double-stranded RNA by RNase HI from a thermoacidophilic archaeon, Sulfolobus tokodaii 7
Ohtani N., Yanagawa H., Tomita M., Itaya M.
Nucleic Acids Research 32 ( 19 ) 5809 - 5819 2004.12
ISSN 03051048
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Comparative Analysis of Physical Maps of Four Bacillus subtilis (natto) Genomes
Qiu, Dongru Fujita, Kyoko Sakuma, Yuko Tanaka, Teruo Ohashi, Yoshiaki Ohshima, Hideyuki Tomita, Masaru Itaya, Mitsuhiro
Applied & Environmental Microbiology 70 ( 10 ) 6247-6256 - 6256 2004.10
Research paper (scientific journal), Joint Work, ISSN 00992240
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Itoh H, Washio T, Tomita M.
RNA 10 ( 7 ) 1005-1018 - 1018 2004.07
Research paper (scientific journal), Joint Work, ISSN 13558382
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Yano Y., Saito R., Yoshida N., Yoshiki A., Wynshaw-Boris A., Tomita M., Hirotsune S.
Journal of Molecular Medicine 82 ( 7 ) 414 - 422 2004.07
ISSN 09462716