Papers - Tomita, Masaru
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Arakawa K., Uno R., Nakayama Y., Tomita M.
Gene 392 ( 1-2 ) 239 - 246 2007.05
ISSN 03781119
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Kinoshita A., Tsukada K., Soga T., Hishiki T., Ueno Y., Nakayama Y., Tomita M., Suematsu M.
Journal of Biological Chemistry 282 ( 14 ) 10731 - 10741 2007.04
ISSN 00219258
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Kinoshita A., Nakayama Y., Kitayama T., Tomita M.
FEBS Journal 274 ( 6 ) 1449 - 1458 2007.03
ISSN 1742464X
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Miyoshi, Fumihiko ; Nakayama, Yoichi ; Kaizu, Kazunari ; Iwasaki, Hideo ; Tomita, Masaru
JOURNAL OF BIOLOGICAL RHYTHMS 22 ( 1 ) 69-80 - 80 2007.02
Research paper (scientific journal), Joint Work, ISSN 0748-7304
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Noise-reduction filtering for accurate detection of replication termini in bacterial genomes
Arakawa, Kazuharu ; Saito, Rintaro ; Tomita, Masaru
FEBS LETTERS 581 ( 2 ) 253-258 - 258 2007.01
Research paper (scientific journal), Joint Work, ISSN 0014-5793
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eXpanda: an Integrated Platform for Network Analysis and Visualization
Negishi, Y., Nakamura, H., Yachie, N., Saito, R. and Tomita, M.
In silico Biology 7 ( 2 ) 141 - 144 2007
ISSN 13866338
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Evolution of ribonuclease H genes in prokaryotes to avoid inheritance of redundant genes
Kochiwa, H., Tomita, M. and Kanai, A.
BMC Evolutionary Biology 7 128 2007
Research paper (scientific journal), Joint Work
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Indeterminacy of Reverse Engineering of Gene Regulatory Networks: The Curse of Gene Elasticity
Krishnan, A., Giuliani, A. and Tomita, M
PLoS ONE 2 ( 6 ) e562 2007
Research paper (scientific journal), Joint Work
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Restauro-G: A Rapid Genome Re-Annotation System for Comparative Genomics
Tamaki, S., Arakawa, K., Kono, N. and Tomita, M.
Genomics Proteomics Bioinformatics 5; 53-58(2007) 5 ( 1 ) 53-58 - 58 2007
Research paper (scientific journal), Joint Work, ISSN 16720229
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Computational analysis of microRNA-mediated antiviral defense in humans
Watanabe, Y., Kishi, A., Yachie, N., Kanai, A. and Tomita, M.
FEBS Letters 581 ( 24 ) 4603-4610 - 4610 2007
Research paper (scientific journal), Joint Work, ISSN 00145793
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Monton, M., Tomita, M., Soga, T. and Ishihama, Y.
Analytical Chemistry 79 ( 20 ) 7838-7844 - 7844 2007
Research paper (scientific journal), Joint Work, ISSN 00032700
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Sugiyama, N., Masuda, T., Shinoda, K., Nakamura, A., Tomita, M. and Ishihama, Y.
Mol Cell Proteomics 6 ( 6 ) 1103-1109 - 1109 2007
Research paper (scientific journal), Joint Work, ISSN 15359476
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Statistical Analysis of Gene Expression in Innate Immune Responses: Dynamic Interactions between MicroRNA and Signaling Molecules
Piras, V., Selvarajoo, K., Fujikawa, N., Choi, S., Tomita, M., Giuliani, A. and Tsuchiya, M.
Genomics and Informatics 5 107-112 2007
Research paper (scientific journal), Joint Work
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Multiple high throughput analyses monitor the response of E. coli to perturbations
Ishii, N., Nakahigashi, K., Baba, T., Robert, M., Soga, T., Kanai, A., Hirasawa, T., Naba, M., Hirai, K., Hoque, A., Yee, Ho, Pei., Kakazu, Y., Sugawara, K., Igarashi, S., Harada, S., Masuda, T., Sugiyama, N., Togashi, T., Hasegawa, M., Takai, T., Yugi, K., Arakawa, K., Iwata, N., Toya, Y., Nakayama, Y., Nishioka, T., Shimizu, K., Mori, H. and Tomita, M.
Science 316 ( 5824 ) 593-597 - 597 2007
Research paper (scientific journal), Joint Work, ISSN 00368075
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Network scaling invariants help to elucidate basic topological principles of proteins
Krishnan, A., Giuliani, A., Zbilut, J.P. and Tomita, M.
Journal of Proteome Research 6 ( 10 ) 3924-3934 - 3934 2007
Research paper (scientific journal), Joint Work, ISSN 15353893
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Inferring rules of Escherichia coli translational efficiency using an artificial neural network
Mori, K., Saito, R., Kikuchi, S. and Tomita, M.
BioSystems 90 ( 2 ) 414-420 - 420 2007
Research paper (scientific journal), Joint Work, ISSN 03032647
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Computational Methods for MicroRNA Target Prediction
Watanabe, Y., Tomita, M. and Kanai, A.
Methods in Enzymology 427 65-86 - 86 2007
Research paper (scientific journal), Joint Work, ISSN 00766879
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Arakawa, K. and Tomita, M.
Evolutionary Bioinformatics 3 279-286 - 286 2007
Research paper (scientific journal), Joint Work
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Sugahara, J., Yachie, N., Arakawa, K. and Tomita, M.
RNA 13 ( 5 ) 671-681 - 681 2007
Research paper (scientific journal), Joint Work, ISSN 13558382
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Inhibitory effect of phosphoenolpyruvate on glycolytic enzymes in Escherichia coli
Ogawa, T., Mori, H., Tomita, M. and Yoshino, M.
Research in Microbiology 158 ( 2 ) 159-163 - 163 2007
Research paper (scientific journal), Joint Work, ISSN 09232508