Papers - Tomita, Masaru
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Towards the systematic discovery of signal transduction networks using phosphorylation dynamics data
Imamura, H., Yachie, N., Saito, R., Ishihama, Y. and Tomita, M.
BMC Bioinformatics (BMC Bioinformatics) 11 232 2010
Research paper (scientific journal), Joint Work, Accepted
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Kim, H., Lee, B. S., Tomita, M. and Kanai, A.
PLoS ONE (PLoS ONE) 5 ( 5 ) e10567 2010
Research paper (scientific journal), Joint Work, Accepted
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Core promoter structure and genomic context reflect histone 3 lysine 9 acetylation patterns
Kratz, A., Arner, E., Saito, R., Kubosaki, A., Kawai, J., Suzuki, H., Carninci, P., Arakawa, T., Tomita, M., Hayashizaki, Y. and Daub, C.O.
BMC Genomics (BMC Genomics) 11 ( 1 ) 257 2010
Research paper (scientific journal), Joint Work, Accepted
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Unveiling cellular biochemical reactions via metabolomics-driven approaches
Saito, N., Ohashi, Y., Soga, T. and Tomita, M.
Curr Opin Microbiol. (Current Opinion in Microbiology) 13 ( 3 ) 358-362 - 362 2010
Research paper (scientific journal), Joint Work, Accepted, ISSN 13695274
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Unbiased quantitation of Escherichia coli membrane proteome using phase-transfer surfactants
Masuda,T., Saito, N., Tomita, M. and Ishihama, M.
Mol Cell Proteomics. (Molecular and Cellular Proteomics) 8 ( 12 ) 2770-2777 - 2777 2009.12
Research paper (scientific journal), Joint Work, Accepted, ISSN 15359476
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Nock A., Ascano J.M., Jones T., Barrero M.J., Sugiyama N., Tomita M., Ishihama Y., Malik S.
Journal of Biological Chemistry (Journal of Biological Chemistry) 284 ( 30 ) 19915 - 19926 2009.07
ISSN 00219258
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Ooga T., Ohashi Y., Kuramitsu S., Koyama Y., Tomita M., Soga T., Masui R.
Journal of Biological Chemistry (Journal of Biological Chemistry) 284 ( 23 ) 15549 - 15556 2009.06
ISSN 00219258
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Benzodiazepine and antidepressant use in elderly patients with anxiety disorders: a survey of 796 outpatients in Japan.
Uchida H, Suzuki T, Mamo DC, Mulsant BH, Kikuchi T, Takeuchi H, Tomita M, Watanabe K, Yagi G, Kashima H
Journal of anxiety disorders 23 ( 4 ) 477 - 81 2009.05
ISSN 0887-6185
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Kanai A., Sato A., Fukuda Y., Okada K., Matsuda T., Sakamoto T., Muto Y., Yokoyama S., Kawai G., Tomita M.
RNA 15 ( 3 ) 420 - 431 2009.03
ISSN 13558382
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Six classes of nuclear localization signals specific to different binding grooves of importin α
Kosugi S., Hasebe M., Matsumura N., Takashima H., Miyamoto-Sato E., Tomita M., Yanagawa H.
Journal of Biological Chemistry 284 ( 1 ) 478 - 485 2009.01
ISSN 00219258
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Shinoda, K., Tomita, M. and Ishihama,Y.
Bioinformatics (Bioinformatics) 26 ( 4 ) 576-577 - 577 2009
Research paper (scientific journal), Joint Work, Accepted, ISSN 13674803
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Cooperativity of two active sites in bacterial homodimeric aconitases
Tsuchiya D, Shimizu N, Tomita M
Biochem Biophys Res Commun 379 ( 2 ) 485-488 - 488 2009
Research paper (scientific journal), Joint Work, Accepted, ISSN 0006291X
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Predicting novel features of toll-like receptor 3 signaling in macrophages
Helmy, M., Gohda, J, Inoue, J., Tomita, M. Tsuchiya, M. and Selvarajoo, K.
PLoS ONE. 4 ( 11 ) e4661 2009
Research paper (scientific journal), Joint Work, Accepted
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Fujishima, K., Sugahara, J., Kikuta, K. Hirano, R.,Sato, A., Tomita, M. and Kanai
Proc Natl Acad Sci U S A. 106 ( 8 ) 2683-7 - 2687 2009
Research paper (scientific journal), Joint Work, Accepted, ISSN 00278424
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Genome Projector: zoomable genome map with multiple views
Arakawa, K., Tamaki, S., Kono, N., Kido, N., Ikegami, K., Ogawa, R.and Tomita, M
BMC Bioinformatics 10 31 2009
Research paper (scientific journal), Joint Work, Accepted
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Local and Global responses in complex gene regulation networks
Tsuchiya, M., Selvarajoo, K., Piras, V., Tomita, M. and Giuliani, A.
Physica A 388 ( 8 ) 1738-1746 - 1746 2009
Research paper (scientific journal), Joint Work, Accepted, ISSN 03784371
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Can complex cellular processes be governed by simple linear rules?
Selvarajoo, K., Tomita, M. and Tsuchiya, M.
J Bioinform Comput Biol. (Journal of Bioinformatics and Computational Biology) 7 ( 1 ) 243-268 - 268 2009
Research paper (scientific journal), Joint Work, Accepted, ISSN 02197200
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Yachie, N., Saito, R., Sugahara, J., Tomita, M. and Ishihama, Y
Mol Cell Proteomics. (Molecular and Cellular Proteomics) 8 ( 5 ) 1061-71 - 1071 2009
Research paper (scientific journal), Joint Work, Accepted, ISSN 15359476
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Chemical Cleavage-Assisted Tryptic Digestion for Membrane Proteome Analysis
Iwasaki, M., Masuda, T., Tomita, M. and Ishihama, Y.
J. Proteome Re (Journal of Proteome Research) 8 ( 6 ) 1061-71 - 3175 2009
Research paper (scientific journal), Joint Work, Accepted, ISSN 15353893
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Saito, N., Robert, M., Kochi, H., Matsuo, G., Kakazu, Y., Soga, T. and Tomita, M.
J. Biol. Chem. (Journal of Biological Chemistry) 284 ( 24 ) 16442-51 - 16451 2009
Research paper (scientific journal), Joint Work, Accepted, ISSN 00219258