Papers - Tomita, Masaru
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Update on the Keio collection of Escherichia coli single-gene deletion mutants
Yamamoto, N., Nakahigashi, K., Nakamichi, T., Yoshino, M., Takai, Y., Touda, Y., Furubayashi, A., Kinjyo, S., Dose, H., Hasegawa, M., Datsenko, K. A., Toru Nakayashiki, T., Tomita, M., Barry L Wanner, L. B. and Hirotada Mori, H.
Molecular Systems Biology 5 335 2009
Research paper (scientific journal), Joint Work, Accepted
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Recharacterization of Chlamydomonas reinhardtii and its relatives with new isolates from Japan
Nakada, T., Shinkawa, H., Ito, T., and Tomita, M.
J Plant Res (Journal of Plant Research) 123 ( 1 ) 67–78 - 78 2009
Research paper (scientific journal), Joint Work, Accepted, ISSN 09189440
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Arakawa, K., Suzuki, H. and Tomita, M.
BMC Genomics (BMC Genomics) 10 640 2009
Research paper (scientific journal), Joint Work, Accepted
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Correlation between Sensory Evaluation Scores of Japanese Sakeand Metabolome Profiles
Sugimoto, M., Koseki ,T., Hirayama, A., Abe, S., Sano, T., Tomita, M., and Soga, T.
J. Agric. FoodChem 2010 (Journal of Agricultural and Food Chemistry) 58 ( 1 ) 374–383 - 383 2009
Research paper (scientific journal), Joint Work, Accepted, ISSN 00218561
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Sugimoto, M., Wong, D. T., Hirayama, A., Soga, T. and Tomita
Metabolomics (Metabolomics) 6 ( 1 ) 78-95 - 95 2009
Research paper (scientific journal), Joint Work, Accepted, ISSN 15733882
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Imami, K., Sugiyama, N., Tomita, M. and Ishihama, Y.
Mol. BioSyst. (Molecular BioSystems) 6 ( 3 ) 594-602 - 602 2009
Research paper (scientific journal), Joint Work, ISSN 1742206X
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Hirayama, A., Kami, K., Sugimoto, M., Sugawara, M., Toki, N., Onozuka, H., Kinoshita, T., Saito, N., Ochiai, A., Tomita, M., Esumi, H. and Soga, T.
Cancer Res (Cancer Research) 69 ( 11 ) 4918-25 - 4925 2009
Research paper (scientific journal), Joint Work, Accepted, ISSN 00085472
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Cooperativity of two active sites in bacterial homodimeric aconitases
Tsuchiya D, Shimizu N, Tomita M
Biochem Biophys Res Commun 379 ( 2 ) 485-488 - 488 2009
Research paper (scientific journal), Joint Work, Accepted, ISSN 0006291X
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Predicting novel features of toll-like receptor 3 signaling in macrophages
Helmy, M., Gohda, J, Inoue, J., Tomita, M. Tsuchiya, M. and Selvarajoo, K.
PLoS ONE. 4 ( 11 ) e4661 2009
Research paper (scientific journal), Joint Work, Accepted
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Fujishima, K., Sugahara, J., Kikuta, K. Hirano, R.,Sato, A., Tomita, M. and Kanai
Proc Natl Acad Sci U S A. 106 ( 8 ) 2683-7 - 2687 2009
Research paper (scientific journal), Joint Work, Accepted, ISSN 00278424
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Genome Projector: zoomable genome map with multiple views
Arakawa, K., Tamaki, S., Kono, N., Kido, N., Ikegami, K., Ogawa, R.and Tomita, M
BMC Bioinformatics 10 31 2009
Research paper (scientific journal), Joint Work, Accepted
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Local and Global responses in complex gene regulation networks
Tsuchiya, M., Selvarajoo, K., Piras, V., Tomita, M. and Giuliani, A.
Physica A 388 ( 8 ) 1738-1746 - 1746 2009
Research paper (scientific journal), Joint Work, Accepted, ISSN 03784371
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Can complex cellular processes be governed by simple linear rules?
Selvarajoo, K., Tomita, M. and Tsuchiya, M.
J Bioinform Comput Biol. (Journal of Bioinformatics and Computational Biology) 7 ( 1 ) 243-268 - 268 2009
Research paper (scientific journal), Joint Work, Accepted, ISSN 02197200
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Yachie, N., Saito, R., Sugahara, J., Tomita, M. and Ishihama, Y
Mol Cell Proteomics. (Molecular and Cellular Proteomics) 8 ( 5 ) 1061-71 - 1071 2009
Research paper (scientific journal), Joint Work, Accepted, ISSN 15359476
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Chemical Cleavage-Assisted Tryptic Digestion for Membrane Proteome Analysis
Iwasaki, M., Masuda, T., Tomita, M. and Ishihama, Y.
J. Proteome Re (Journal of Proteome Research) 8 ( 6 ) 1061-71 - 3175 2009
Research paper (scientific journal), Joint Work, Accepted, ISSN 15353893
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Saito, N., Robert, M., Kochi, H., Matsuo, G., Kakazu, Y., Soga, T. and Tomita, M.
J. Biol. Chem. (Journal of Biological Chemistry) 284 ( 24 ) 16442-51 - 16451 2009
Research paper (scientific journal), Joint Work, Accepted, ISSN 00219258
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Tsuchiya, M., Piras, V., Choi, S., Akira, S., Tomita, M., Giuliani, A. and Selvarajoo, K.
PLoS One 4 ( 3 ) e4905 2009
Research paper (scientific journal), Joint Work, Accepted
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Ser/Thr/Tyr phosphoproteome analysis of pathogenic and non-pathogenic Pseudomonas species
Ravichandran, A., Sugiyama, N., Tomita, M., Swarup, S. and Ishihama, Y.
Proteomics. (Proteomics) 9 ( 10 ) 2764-2775 - 2775 2009
Research paper (scientific journal), Joint Work, Accepted, ISSN 16159853
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Network features and pathway analyses of a signal transduction cascade
Yanashima, R, Kitagawa N., Matsubara, Y., Weatheritt, R., Oka, K., Kikuchi, S., Tomita, M,and Ishizaki, S.
Front Neuroinform. 3 ( MAY ) 13 2009
Research paper (scientific journal), Joint Work, Accepted, ISSN 16625196
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Sugahara J., Kikuta K., Fujishima K., Yachie N., Tomita M., Kanai A.
Molecular Biology and Evolution 25 ( 12 ) 2709 - 2716 2008.12
ISSN 07374038