Papers - Tomita, Masaru
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Tsuchiya, M., Piras, V., Choi, S., Akira, S., Tomita, M., Giuliani, A. and Selvarajoo, K.
PLoS One 4 ( 3 ) e4905 2009
Research paper (scientific journal), Joint Work, Accepted
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Ser/Thr/Tyr phosphoproteome analysis of pathogenic and non-pathogenic Pseudomonas species
Ravichandran, A., Sugiyama, N., Tomita, M., Swarup, S. and Ishihama, Y.
Proteomics. (Proteomics) 9 ( 10 ) 2764-2775 - 2775 2009
Research paper (scientific journal), Joint Work, Accepted, ISSN 16159853
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Network features and pathway analyses of a signal transduction cascade
Yanashima, R, Kitagawa N., Matsubara, Y., Weatheritt, R., Oka, K., Kikuchi, S., Tomita, M,and Ishizaki, S.
Front Neuroinform. 3 ( MAY ) 13 2009
Research paper (scientific journal), Joint Work, Accepted, ISSN 16625196
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Hirayama, A., Kami, K., Sugimoto, M., Sugawara, M., Toki, N., Onozuka, H., Kinoshita, T., Saito, N., Ochiai, A., Tomita, M., Esumi, H. and Soga, T.
Cancer Res (Cancer Research) 69 ( 11 ) 4918-25 - 4925 2009
Research paper (scientific journal), Joint Work, Accepted, ISSN 00085472
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Measure of synonymous codon usage diversity among genes in bacteria
Suzuki, H., Saito, R. and Tomita, M
BMC Bioinformatics (BMC Bioinformatics) 10 167 2009
Research paper (scientific journal), Joint Work, Accepted
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Metabolomic Profiling of Anionic Metabolites by Capillary Electrophoresis Mass Spectrometry
Soga, T., Igarashi, K., Itoh, C., Mizobuchi, K., Zimmermann, H. P. and Tomita, M.
Analytical Chemistry (Analytical Chemistry) 81 ( 15 ) 6165-6174 - 6174 2009
Research paper (scientific journal), Joint Work, Accepted, ISSN 00032700
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Kosugi, S., Hasebe, M., Tomita, M. and Yanagawa, H.
Proc Natl Acad Sci U S A. (Proceedings of the National Academy of Sciences of the United States of America) 106 ( 31 ) 13142. - 10176 2009
Research paper (scientific journal), Joint Work, Accepted, ISSN 00278424
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Nakahigashi, K., Toya, Y., Ishii, N., Soga, T., Hasegawa, M., Watanabe, H., Takai, Y., Honma, M., Mori, H. and Tomita, M.
Molecular Systems Biology 5 306 2009
Research paper (scientific journal), Joint Work, Accepted, ISSN 17444292
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A web server for interactive and zoomable Chaos Game Representation images
Arakawa, K., Oshita, K. and Tomita, M.
Source Code for Biology and Medicine (Source Code for Biology and Medicine) 4 6 2009
Research paper (scientific journal), Joint Work, Accepted
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Modeling reaction-diffusion of molecules on surface and in volume spaces with the E-Cell System
Arjunan, S. N. V., and Tomita, M.
International Journal of Computer Science and Information Security 3 ( 1 ) 211-216 2009
Research paper (scientific journal), Joint Work, Accepted
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Nishino, T., Yachie, A. K., Hirayama. A., Soga, T., Suematsu, T., and Tomita, M.
Journal of Biotechnology (Journal of Biotechnology) 144 ( 3 ) 212-223 - 223 2009
Research paper (scientific journal), Joint Work, Accepted, ISSN 01681656
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Pathway Projector: Web-based Zoomable Pathway Browser using KEGG Atlas and Google Maps API
Kono, N., Arakawa, K., Ogawa, R., Kido, N., Oshita, K., Ikegami, K., Tamaki, S. and Tomita, M.
PLoS ONE (PLoS ONE) 4 ( 11 ) e7710 2009
Research paper (scientific journal), Joint Work, Accepted
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Disrupted tRNA Gene Diversity and Possible Evolutionary Scenarios
Sugahara, J., Fujishima, K., Morita, K., Tomita, M. and Kanai , A.
Journal of Molecular Evolution (Journal of Molecular Evolution) 69 ( 5 ) 497-504 - 504 2009
Research paper (scientific journal), Joint Work, Accepted, ISSN 00222844
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Update on the Keio collection of Escherichia coli single-gene deletion mutants
Yamamoto, N., Nakahigashi, K., Nakamichi, T., Yoshino, M., Takai, Y., Touda, Y., Furubayashi, A., Kinjyo, S., Dose, H., Hasegawa, M., Datsenko, K. A., Toru Nakayashiki, T., Tomita, M., Barry L Wanner, L. B. and Hirotada Mori, H.
Molecular Systems Biology 5 335 2009
Research paper (scientific journal), Joint Work, Accepted
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Recharacterization of Chlamydomonas reinhardtii and its relatives with new isolates from Japan
Nakada, T., Shinkawa, H., Ito, T., and Tomita, M.
J Plant Res (Journal of Plant Research) 123 ( 1 ) 67–78 - 78 2009
Research paper (scientific journal), Joint Work, Accepted, ISSN 09189440
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Arakawa, K., Suzuki, H. and Tomita, M.
BMC Genomics (BMC Genomics) 10 640 2009
Research paper (scientific journal), Joint Work, Accepted
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Correlation between Sensory Evaluation Scores of Japanese Sakeand Metabolome Profiles
Sugimoto, M., Koseki ,T., Hirayama, A., Abe, S., Sano, T., Tomita, M., and Soga, T.
J. Agric. FoodChem 2010 (Journal of Agricultural and Food Chemistry) 58 ( 1 ) 374–383 - 383 2009
Research paper (scientific journal), Joint Work, Accepted, ISSN 00218561
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Sugimoto, M., Wong, D. T., Hirayama, A., Soga, T. and Tomita
Metabolomics (Metabolomics) 6 ( 1 ) 78-95 - 95 2009
Research paper (scientific journal), Joint Work, Accepted, ISSN 15733882
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Imami, K., Sugiyama, N., Tomita, M. and Ishihama, Y.
Mol. BioSyst. (Molecular BioSystems) 6 ( 3 ) 594-602 - 602 2009
Research paper (scientific journal), Joint Work, ISSN 1742206X
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Sugahara J., Kikuta K., Fujishima K., Yachie N., Tomita M., Kanai A.
Molecular Biology and Evolution 25 ( 12 ) 2709 - 2716 2008.12
ISSN 07374038