-
Affiliation
-
Faculty of Science and Technology, Department of Physics (Yagami)
-
Position
-
Assistant Professor/Senior Assistant Professor
KEIO RESEARCHERS INFORMATION SYSTEM |
Details of a Researcher
このページはJavascriptを使用しています。すべての機能を使用するためにはJavascript を有効にする必要があります。
Oroguchi, Tomotaka
|
横浜市立大学大学院, 生命ナノシステム科学研究科, 博士研究員
慶應義塾大学, 理工学部 物理学科, 助教
慶應義塾大学, 理工学部 物理学科, 専任講師
The University of Tokyo, 工学部, マテリアル工学科
University, Graduated, Other
The University of Tokyo, 理学系研究科, 物理学専攻
Graduate School, Completed, Master's course
The University of Tokyo, 理学系研究科, 物理学科
Graduate School, Completed, Doctoral course
Natural Science / Biophysics, chemical physics and soft matter physics
分子シミュレーションと実験の融合的解析技術の開発,
蛋白質ダイナミクスの可視化,
蛋白質水和構造の物性研究,
蛋白質フォールディングの原理,
Water and Biomolecules
Kunihiro Kuwajima, Tomotaka Oroguchi, Takashi Nakamura, Mitsunori Ikeguchi, Tomotaka Oroguchi, Springer-Verlag Berlin Heidelberg, 2009.01
Scope: Experimental and simulation studies of the folding/unfolding of goat alpha-lactalbumin
Internal dynamics of multidomain protein as revealed by an optimized neutron spin echo measurement and all-atom molecular dynamics simulation
Rintaro Inoue*, Tomotaka Oroguchi*, Takashi Oda*, Bela Farago, Anne Martel, Lionel Porcar, Mamoru Sato, Masaaki Sugiyama (*equally contributed)
Physical Review Research 5 ( 4 ) 043154 2023.12
Research paper (scientific journal), Joint Work, Lead author, Accepted
Amane Kobayashi, Yuki Takayama, Takeshi Hirakawa, Koji Okajima, Mao Oide, Tomotaka Oroguchi, Yayoi Inui, Masaki Yamamoto, Sachihiro Matsunaga, Masayoshi Nakasako
Scientific Reports 11 ( 1 ) 3877 2021.12
Research paper (scientific journal), Joint Work, Accepted
Masayoshi Nakasako, Mao Oide, Yuki Takayama, Tomotaka Oroguchi, Koji Okajima
International journal of molecular sciences 21 ( 18 ) 6638 2020.09
Joint Work, Accepted
Tomotaka Oroguchi, Mao Oide, Taiki Wakabayashi, Masayoshi Nakasako
Journal of Physical Chemistry B 124 ( 39 ) 8479 - 8494 2020.10
Research paper (scientific journal), Joint Work, Lead author, Corresponding author, Accepted
Energy landscape of domain motion in glutamate dehydrogenase deduced from cryo-electron microscopy
Mao Oide, Takayuki Kato, Tomotaka Oroguchi, Masayoshi Nakasako
FEBS Journal 287 ( 16 ) 3472 - 3493 2020.08
Research paper (scientific journal), Joint Work, Accepted
Visualization of protein dynamics in molecular crowding environment
Oroguchi, Tomotaka
科学研究費補助金研究成果報告書 2019
Effects of hydrogen-bond directionality on stabilities of protein secondary structures
Oroguchi, Tomotaka
学事振興資金研究成果実績報告書 (慶應義塾大学) 2018
Role of water molecules in biomolecular functions and interactions
Oroguchi, Tomotaka
科学研究費補助金研究成果報告書 2015
水素結合方向性における非共有結合対の影響: 分子動力学シミュレーションによる評価
苙口 友隆
アンサンブル 23 176 - 181 2021
Article, review, commentary, editorial, etc. (scientific journal), Single Work, Lead author, Last author, Corresponding author
Methods and application of coherent X-ray diffraction imaging of noncrystalline particles
Masayoshi Nakasako, Amane Kobayashi, Yuki Takayama, Kenta Asakura, Mao Oide, Koji Okajima, Tomotaka Oroguchi, Masaki Yamamoto
(Biophysical Reviews) 12 541 - 567 2020
Article, review, commentary, editorial, etc. (scientific journal), Joint Work
水和構造によって制御される蛋白質の機能的ドメイン運動
苙口 友隆、中迫雅由
生物物理 58 204 - 206 2018
Article, review, commentary, editorial, etc. (scientific journal), Joint Work, Lead author
生物細胞の低温X線回折イメージング
中迫雅由、高山裕貴、小林周、山本高寛、大出真央、岡島公司、苙口 友隆、山本雅貴
放射光 31 189 - 201 2018
Article, review, commentary, editorial, etc. (scientific journal), Joint Work
X線自由電子レーザーを用いた非結晶粒子のコヒーレントX線回折イメージング
中迫雅由、苙口 友隆、関口優希、小林周、橋本早紀、山本雅貴、引間孝明、米倉功治、高山裕貴、眞木さおり、高橋幸生、鈴木明大、松永幸大、乾弥生、胡桃坂仁志、市川雄一、星貴彦
日本結晶学会誌 55 24 - 31 2014
Article, review, commentary, editorial, etc. (scientific journal), Joint Work
Optimization of MD-derived conformational ensemble in information content space and its application to experimental X-ray solution scattering data
Tomotaka Oroguchi
TSRC Proten Dynamiccs Workshop 2023,
Oral presentation (invited, special)
Protein conformational fluctuations and hydration structures investigated by the combination of MD simulations and X-ray experiments
Tomotaka Oroguchi
TSRC Protein Dynamics Workshop 2017,
Oral presentation (invited, special)
Protein functional dynamics investigated by small-angle X-ray solution scattering and molecular dynamics simulation
Tomotaka Oroguchi
Okazaki Conference 2017,
Oral presentation (invited, special)
Nanoscale wetting and drying processes dominate protein functional motions
Tomotaka Oroguchi
TSRC Protein Dynamics Workshop 2015,
Oral presentation (invited, special)
Protein dynamics investigated by small-angle x-ray solution scattering and molecular dynamics simulation
Tomotaka Oroguchi
The 4th Japan-France Joint Seminar (播磨、兵庫県) ,
Oral presentation (invited, special)
水素結合の方向性を厳密に取り扱った高信頼度な蛋白質分子力場の開発
MEXT, JSPS, Grant-in-Aid for Scientific Research, 基盤研究(C), Research grant, Principal investigator
新世代中性子構造生物学の開拓
MEXT, JSPS, Grant-in-Aid for Scientific Research, 基盤研究(S), Research grant, Coinvestigator(s)
生体分子の機能発揮機構における水和構造の役割の解明
MEXT, JSPS, Grant-in-Aid for Scientific Research, 若手研究(A), Research grant, Principal investigator
分子クラウディング環境下における生体分子の機能的構造揺らぎの解析
MEXT, JSPS, Grant-in-Aid for Scientific Research, 挑戦的研究(萌芽), Research grant, Principal investigator
分子シミュレーションと溶液X線散乱実験を用いた生体分子の構造揺らぎの解析
慶應義塾大学, Keio Gijuku Academic Development Funds, Research grant, Principal investigator
PHYSICS LABORATORIES 2
2024
PHYSICS LABORATORIES 1
2024
PHYSICS A
2024
LITERATURE OF PHYSICS
2024
LABORATORY IN SCIENCE
2024
日本放射光学会学会誌 編集委員
日本放射光学会第6回若手研究会 組織委員
International Symposium on Protein Folding and its Biological Significance 組織委員
生物物理若手の会第44回夏の学校 組織委員
生物物理若手の会 運営委員