KEIO RESEARCHERS INFORMATION SYSTEM

Career 【 Display / hide 】

Career 【 Display / hide 】

• 2013.04

  -

  2013.08

  東京大学大学院, 情報理工学系研究科 システム情報学専攻, 特任研究員

• 2013.09

  -

  2016.03

  California Institute of Technology, Department of Computing and Mathematical Sciences, Postdoctoral Scholar

• 2017.04

  -

  2019.03

  Institute of Physical and Chemical Research, 統合生命医科学研究センター統合ゲノミクス研究グループ, 客員研究員

Academic Background 【 Display / hide 】

Academic Background 【 Display / hide 】

• 2008.03

  The University of Tokyo, 工学部, 計数工学科

  University, Graduated

• 2010.03

  The University of Tokyo, 情報理工学系研究科, システム情報学専攻

  Graduate School, Completed, Master's course

• 2013.03

  The University of Tokyo, 情報理工学系研究科, システム情報学専攻

  Graduate School, Completed

Academic Degrees 【 Display / hide 】

Academic Degrees 【 Display / hide 】

• 学士(工学), The University of Tokyo, 2008.03

• 修士(情報理工学), The University of Tokyo, 2010.03

• 博士 (情報理工学), The University of Tokyo, 2013.03

Research Areas 【 Display / hide 】

Research Areas 【 Display / hide 】

• Manufacturing Technology (Mechanical Engineering, Electrical and Electronic Engineering, Chemical Engineering) / Control and system engineering

Research Keywords 【 Display / hide 】

Research Keywords 【 Display / hide 】

• molecular systems

• molecular robotics

• 制御工学

• 制御理論

• 合成生物学

Books 【 Display / hide 】

Books 【 Display / hide 】

• Control Theory for Diffusion-Based Molecular Communication Systems

  Taishi Kotsuka, Yutaka Hori, Springer Nature, 2026.01,  Page： pp. 231--240

  Scope: pp. 213〜240

Papers 【 Display / hide 】

Papers 【 Display / hide 】

• Parameter Invariance Analysis of Moment Equations Using Dulmage-Mendelsohn Decomposition

  Akito Igarashi, Yutaka Hori

  IEEE Control Systems Letters    402 - 407 2025.05

  Research paper (scientific journal), Joint Work, Accepted

• Evaluation of the microenvironment formed by interferon-β

  Mai Yamagishi, Yutaka Hori, Nobutake Suzuki, Yu Peng, Yoshie Harada, Takashi Funatsu, Osamu Ohara, Yoshitaka Shirasaki

  Frontiers in Chemical Biology 3   1425571 2025.01

  Research paper (scientific journal), Joint Work, Accepted

• Orthogonal Modal Representation in Long-Term Risk Quantification for Dynamic Multi-Agent Systems

  Ryoma Yasunaga, Yorie Nakahira, Yutaka Hori

  IEEE Control Systems Letters 8   3177 - 3182 2024.12

  Joint Work, Accepted

  　View Summary

  Quantifying long-term risk in large-scale multi-agent systems is critical for ensuring safe operation. However, the high dimensionality of these systems and the rarity of risk events can make the required computations prohibitively expensive. To overcome this challenge, we introduce a graph-based representation and efficient risk quantification techniques tailored for stochastic multi-agent systems. A key technical innovation is a systematic approach to decompose the estimation problem of system-wide safety probabilities into smaller, lower-dimensional sub-systems with sub-safe sets. This decomposition leverages the graph Fourier basis of the agent interaction network, providing a natural and scalable representation. The safety probabilities for these sub-systems are derived as solutions to a set of low-dimensional partial differential equations (PDEs). The proposed decomposition enables existing risk quantification approaches but does so without an exponential increase in computational complexity with respect to the number of agents.

  • Access to Document (DOI)

• Parameter-preserving model order reduction of chemical master equations with a priori error bound

  Masaya Miyazaki, Yutaka Hori

  Proceedings of Asian Control Conference    879 - 884 2024.07

  Research paper (international conference proceedings), Joint Work, Accepted

• Stability analysis for large-scale multi-agent molecular communication systems

  Stability analysis for large-scale multi-agent molecular communication systems

  IEEE Transactions on NanoBioscience 23 ( 3 ) 507 - 517 2024.05

  Research paper (scientific journal), Joint Work, Accepted

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Papers, etc., Registered in KOARA 【 Display / hide 】

Papers, etc., Registered in KOARA 【 Display / hide 】

• Robust prediction of the dynamics of biocircuits using integrated first-principles and data-driven models

  Hori, Yutaka

  科学研究費補助金研究成果報告書 2021

• Feedback control theory and experimental platform for designing stochastic chemical reactions

  Hori, Yutaka

  学事振興資金研究成果実績報告書 (慶應義塾大学)  2018

• Feedback control theory and experimental platform for designing stochastic chemical reactions

  Hori, Yutaka

  学事振興資金研究成果実績報告書 (慶應義塾大学)  2017

• Theory and experimental setup for set based model identification of genetic circuits using frequency response

  Hori, Yutaka

  科学研究費補助金研究成果報告書 2017

Reviews, Commentaries, etc. 【 Display / hide 】

Reviews, Commentaries, etc. 【 Display / hide 】

• 生体分子を材料とする人工システムの設計と制御 〜生物と人工物をつなぐためのフレームワーク〜

  堀 豊

  計測と制御 60 ( 7 )  2021.07

  Article, review, commentary, editorial, etc. (scientific journal), Single Work

• 確率ゆらぎを利用した生体分子システムの設計

  堀 豊

  計測と制御 60 ( 5 ) 345 - 350 2021.05

  Article, review, commentary, editorial, etc. (scientific journal), Single Work

• Modeling and Analysis of Stochastic Reaction Kinetics in Biomolecular Systems

  Yutaka Hori

  New Generation Computing 38 ( 1 )  2020.05

  Article, review, commentary, editorial, etc. (scientific journal), Single Work

• Control and Biology: Going Beyond the Boundary, and Fusing

  Yutaka Hori

  計測と制御 58 ( 5 ) 323 - 324 2019.05

  Other, Single Work

• Modeling and Analysis of Stochastic Fluctuations in Biomolecular Systems

  Yutaka Hori

  計測と制御 58 ( 4 ) 253 - 257 2019.04

  Article, review, commentary, editorial, etc. (scientific journal), Single Work

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Presentations 【 Display / hide 】

Presentations 【 Display / hide 】

• Learning Neural ODE Models of Molecular Systems Using Parallel Droplet Microreactors

  Yutaka Hori

  [International presentation]  International Conference on Manipulation, Automation and Robotics at Small Scales, 

  2026.07

  , 

  Oral presentation (invited, special)

• Kolmogorovの後退方程式を用いた確率的化学反応系におけるモーメント解析

  岩崎剛之，堀豊

  [Domestic presentation]  第13回計測自動制御学会制御部門マルチシンポジウム, 

  2026.03

  , 

  Poster presentation

• 確率的化学反応ネットワークにおける不変モーメントの網羅的探索

  五十嵐亮人，堀豊

  [Domestic presentation]  第13回計測自動制御学会制御部門マルチシンポジウム, 

  2026.03

  , 

  Oral presentation (general)

• Patterned Polyacrylamide Gel as a Testbed for Molecular Communication

  Manao Ito, Yutaka Hori

  [International presentation]  International Workshop on Biodesign Automation, 

  2025.09

  , 

  Oral presentation (general)

• ポリアクリルアミドゲルによる分子通信系の動特性解析のためのテストベッド

  伊藤愛生，堀豊

  [Domestic presentation]  細胞を創る研究会 18.0, 

  2025.09

  , 

  Poster presentation

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Research Projects of Competitive Funds, etc. 【 Display / hide 】

Research Projects of Competitive Funds, etc. 【 Display / hide 】

• システム理論で拓く実空間での外乱に頑健な分子ロボット設計技法の新展開

  2026.04

  -

  2031.03

  文部科学省・日本学術振興会, 科学研究費助成事業 学術変革領域 (A), Coinvestigator(s)

• クープマン作用素による不安定な非線形系のダイナミクス・デザイン

  2026.04

  -

  2029.03

  文部科学省・日本学術振興会, 科学研究費助成事業 基盤研究(B), Coinvestigator(s)

• 高集積ナノ流体デバイスの創製と超精密核酸合成への応用

  2025.04

  -

  2029.03

  文部科学省・日本学術振興会, 科学研究費助成事業 挑戦的研究（開拓）, Coinvestigator(s)

• サイバーDNA回路システムの最適制御理論とオープンな実験プラットフォーム

  2025.03

  -

  2027.03

  文部科学省・日本学術振興会, 国際共同研究加速基金(国際共同研究強化), Principal investigator

• ロバストな分子情報処理を実現するDNA回路のフィードバック制御システムの構築

  2024.04

  -

  2028.03

  基盤研究(B), Principal investigator

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Intellectual Property Rights, etc. 【 Display / hide 】

Intellectual Property Rights, etc. 【 Display / hide 】

• 線形予測係数算出装置、線形予測係数算出方法、線形予測係数算出プログラム、および記憶媒体

  Date applied： 2008-051149  2008.02 

  Date announced： 2009-210644  2009.09 

  Date issued： 5057334  2012.08

  Patent, Joint

• 符号化装置、復号化装置、符号化方法、復号化方法、プログラム、記録媒体

  Date applied： 2008-051150  2008.02 

  Date announced： 2009-210645  2009.09 

  Date issued： 5010293  2012.06

  Patent, Joint

Awards 【 Display / hide 】

Awards 【 Display / hide 】

• 計測自動制御学会 制御部門マルチシンポジウム賞（基礎分野）

  2026, 計測自動制御学会

  Type of Award： Award from Japanese society, conference, symposium, etc.

Courses Taught 【 Display / hide 】

Courses Taught 【 Display / hide 】

• GRADUATE RESEARCH ON FUNDAMENTAL SCIENCE AND TECHNOLOGY 1

  2026

• APPLIED PHYSICS AND PHYSICO-INFORMATICS LABORATORY B

  2026

• GRADUATE RESEARCH ON MATHEMATICAL AND PHYSICAL SCIENCES 1

  2026

• BACHELOR'S THESIS

  2026

• MATHEMATICAL THEORY IN BIOMOLECULAR SYSTEMS

  2026

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Memberships in Academic Societies 【 Display / hide 】

Memberships in Academic Societies 【 Display / hide 】

• CBI学会, 

  2026

  -

  Present

• 計測自動制御学会

  　

• システム制御情報学会

  　

• IEEE

  　

Committee Experiences 【 Display / hide 】

Committee Experiences 【 Display / hide 】

• 2026.04

  -

  Present

  Editorial Committee Member, Chem-Bio Informatics Journal

• 2025.04

  -

  Present

  代議員, 分子ロボティクス研究会

• 2025.01

  -

  Present

  Associate Editor, IEEE Control Systems Letters

• 2024.04

  -

  2026.03

  Secretary, IEEE Control Systems Society Japan Chapter

• 2023

  -

  Present

  Associate Editor, IEEE Transactions on Molecular, Biological and Multi-Scale Communications

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