Reviews, Commentaries, etc. - Tsukada, Yuki

ImageJ定量階梯(第4回)簡単な画像処理とその応用(色符号化,マスク,鮮鋭化)

塚田 祐基

細胞工学 (学研メディカル秀潤社 ; 1982-)  33 ( 3 ) 337 - 342 2014

ISSN  0287-3796

Image Processing and Analysis in Java

塚田 祐基

細胞工学 (学研メディカル秀潤社 ; 1982-)  33 ( 7 ) 778 - 783 2014

ISSN  0287-3796

Japanese studies on neural circuits and behavior of Caenorhabditis elegans

Hiroyuki Sasakura, Yuki Tsukada, Shin Takagi, Ikue Mori

FRONTIERS IN NEURAL CIRCUITS (FRONTIERS MEDIA SA)  7 ( 187 ) doi: 10.3389/fncir.2013.00187 2013.11

ISSN  1662-5110

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The nematode Caenorhabditis elegans is an ideal organism for studying neural plasticity and animal behaviors. A total of 302 neurons of a C. elegans hermaphrodite have been classified into 118 neuronal groups. This simple neural circuit provides a solid basis for understanding the mechanisms of the brains of higher animals, including humans. Recent studies that employ modern imaging and manipulation techniques enable researchers to study the dynamic properties of nervous systems with great precision. Behavioral and molecular genetic analyses of this tiny animal have contributed greatly to the advancement of neural circuit research. Here, we will review the recent studies on the neural circuits of C. elegans that have been conducted in Japan. Several laboratories have established unique and clever methods to study the underlying neuronal substrates of behavioral regulation in C. elegans. The technological advances applied to studies of C. elegans have allowed new approaches for the studies of complex neural systems. Through reviewing the studies on the neuronal circuits of C. elegans in Japan, we will analyze and discuss the directions of neural circuit studies.

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システム神経科学スプリングスクール2013開催報告

中江 健, 本田 直樹, 浦久保 秀俊, 山尾 将隆, 塚田 祐基, 石井 信

日本神経回路学会誌 = The Brain & neural networks (日本神経回路学会)  20 ( 2 ) 84 - 87 2013.06

ISSN  1340-766X

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Feedback regulation of microscopes by image processing

Yuki Tsukada, Koichi Hashimoto

Development Growth and Differentiation 55 ( 4 ) 550 - 562 2013.05

ISSN  0012-1592

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Computational microscope systems are becoming a major part of imaging biological phenomena, and the development of such systems requires the design of automated regulation of microscopes. An important aspect of automated regulation is feedback regulation, which is the focus of this review. As modern microscope systems become more complex, often with many independent components that must work together, computer control is inevitable since the exact orchestration of parameters and timings for these multiple components is critical to acquire proper images. A number of techniques have been developed for biological imaging to accomplish this. Here, we summarize the basics of computational microscopy for the purpose of building automatically regulated microscopes focus on feedback regulation by image processing. These techniques allow high throughput data acquisition while monitoring both short- and long-term dynamic phenomena, which cannot be achieved without an automated system. Development, Growth &amp
Differentiation © 2013 Japanese Society of Developmental Biologists.

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Fluorescence imaging of neuronal dendrites in moving C. elegans with high speed tracking system

Yuki Tsukada, Ikue Mori

NEUROSCIENCE RESEARCH (ELSEVIER IRELAND LTD)  71   E390 - E390 2011

ISSN  0168-0102

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私の学会聞き歩き 定量生物学の会・第三回年会--手段を選ばない生命科学総力戦へ向けて

塚田 祐基

細胞工学 (学研メディカル秀潤社)  30 ( 4 ) 440 - 442 2011

ISSN  0287-3796

Quantitative analysis of exploratory behavioral patterns during thermotaxis of C. elegans

Yuta Ochiai, Yuki Tsukada, Ikue Mori

NEUROSCIENCE RESEARCH (ELSEVIER IRELAND LTD)  71   E181 - E181 2011

ISSN  0168-0102

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Quantification and phenomenological model for morphology

塚田 祐基, 作村 諭一

Cell technology (学研メディカル秀潤社)  29 ( 4 ) 339 - 343 2010

ISSN  0287-3796

Quantitative behavioral analysis of freely moving C. elegans

Yuki Tsukada, Akiko Miyara, Tomoyasu Shimowada, Noriyuki Ohnishi, Atsushi Kuhara, Ikue Mori

NEUROSCIENCE RESEARCH (ELSEVIER IRELAND LTD)  65   S226 - S227 2009

ISSN  0168-0102

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Studies on neuronal function of a novel and conserved protein TTX-8

Akiko Miyara, Akane Ohta, Yoshifumi Okochi, Yuki Tsukada, Atsushi Kuhara, Ikue Mori

NEUROSCIENCE RESEARCH (ELSEVIER IRELAND LTD)  65   S216 - S216 2009

ISSN  0168-0102

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Quantitative morphodynamic analysis of time-lapse imaging by edge evolution tracking

Tsukada, Y, Sakumura, Y, Ishii, S

Proceedings of the International Conference on Neural Information Processing, Lecture Notes in Computer Science 4984   817 - 826 2007

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