Sato, Kengo

写真a

Affiliation

Faculty of Science and Technology, Department of Biosciences and Informatics (Yagami)

Position

Assistant Professor/Senior Assistant Professor

External Links

Career 【 Display / hide

  • 2003.04
    -
    2006.03

    Instructor, Department of Biosciences and Informatics, Keio University

  • 2006.04
    -
    2009.10

    Researcher, Japan Biological Infomatics Consortium

  • 2006.04
    -
    2015.03

    Visiting Researcher, Computational Biology Research Center, National Institute of Advanced Industrial Science and Technology

  • 2009.11
    -
    2011.03

    Assistant Professor, Department of Computational Biology, Graduate School of Frontier Sciences, University of Tokyo

  • 2011.04
    -
    2014.03

    Assistant Professor, Department of Biosciences and Informatics, Keio University

Academic Background 【 Display / hide

  • 1991.04
    -
    1995.03

    Keio University, Faculty of Science and Technology, Department of Mathematics

    University, Graduated

  • 1995.04
    -
    1997.03

    Keio University, Graduate School of Science and Technology, Department of Computer Science

    Graduate School, Completed, Master's course

  • 1997.04
    -
    2003.03

    Keio University, Graduate School of Science and Technology, School of Science for Open and Environmental Systems

    Graduate School, Completed, Doctoral course

Academic Degrees 【 Display / hide

  • Ph.D., Keio University, Coursework, 2003.03

 

Research Areas 【 Display / hide

  • Intelligent informatics (Intelligent Informatics)

  • Life / Health / Medical informatics

  • System genome science

Research Keywords 【 Display / hide

  • Data Mining

  • Bioinformatics

  • Machine Learning

  • Computational Biology

 

Books 【 Display / hide

  • バイオインフォマティクス入門

    Sato Kengo, 慶應義塾大学出版会, 2015.08

    Scope: 第2章

  • Readings in Japanese Natural Language Processing

    Nobesawa, H.S., Sano, T., Sato, K., Saito, H., CSLI Publications, 2015

    Scope: Domain-specific statistical data for morphological analysis

  • Algorithmic Bioprocesses

    Sakakibara, Y., Sato, K., Springer, 2009.08

    Scope: Sequence and Structural Analyses for Functional non-coding RNAs

  • 実験医学増刊「生命科学の最先端に役立つバイオデータベースとウェブツール総集編」

    佐藤健吾, 榊原康文, 羊土社, 2008.08

    Scope: 二次構造に基づく機能性RNAの配列解析

  • Grammatical Inference: Algorithms and Applications, Lecture Notes in Computer Science

    Yasubumi Sakakibara; Satoshi Kobayashi; Kengo Sato; Tetsuro Nishino; Etsuji Tomita, Springer, 2006

Papers 【 Display / hide

  • 医師国家試験自動解答プログラムの治療薬問題への拡張

    水口達矢, 伊藤詩乃, 佐藤健吾, 榊原康文

    人工知能学会論文誌  2018

    Research paper (scientific journal), Joint Work, Accepted

  • A max-margin training of RNA secondary structure prediction integrated with the thermodynamic model

    Akiyama, M., Sato, K., Sakakibara, Y.

    Journal of Bioinformatics and Computational Biology  2018

    Research paper (scientific journal), Joint Work, Accepted

  • Convolutional neural network based on SMILES representation of compounds for detecting chemical motif

    Hirohara, M., Saito, Y., Koda, Y., Sato, K., Sakakibara, Y.

    BMC Bioinformatics  2018

    Research paper (scientific journal), Joint Work, Accepted

  • DEclust: A statistical approach for obtaining differential expression profiles of multiple conditions

    Aoto, Yoshimasa, Hachiya, Tsuyoshi, Okumura, Kazuhiro, Hase, Sumitaka, Sato, Kengo, Wakabayashi, Yuichi, Sakakibara, Yasubumi

    PLOS ONE 12 ( 11 )  2017.11

    Research paper (scientific journal), Joint Work,  ISSN  1932-6203

  • An accessibility-incorporated method for accurate prediction of RNA-RNA interactions from sequence data

    Kato, Yuki, Mori, Tomoya, Sato, Kengo, Maegawa, Shingo, Hosokawa, Hiroshi, Akutsu, Tatsuya

    BIOINFORMATICS 33 ( 2 ) 202 - 209 2017.01

    Research paper (scientific journal), Joint Work, Accepted,  ISSN  1367-4803

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Papers, etc., Registered in KOARA 【 Display / hide

Reviews, Commentaries, etc. 【 Display / hide

  • 機能性RNAの配列解析と構造解析

    榊原康文,佐藤健吾

    人工知能学会誌 22 ( 1 ) 54 - 62 2007.01

    Introduction and explanation (scientific journal), Joint Work

Presentations 【 Display / hide

  • 深層学習に基づく RNA グアニン4重鎖構造識別法の検討

    加藤有己, 佐藤健吾, Jakob Hull Havgaard, 河原行郎

    第20回日本RNA学会年会, 2018.07, Poster (general)

  • RNA secondary structure prediction using deep learning

    Akiyama, M., Sakakibara, Y., Sato, K.

    第6回生命医薬情報学連合大会,日本バイオインフォマティクス学会2017年年会, 2017.09, Poster (general)

  • がん細胞株における derived RNA のプロファイル解析

    青木言太,土谷麻里子,小坂威雄,長谷純崇,佐藤健吾,水野隆一,大家基嗣,榊原康文

    第19回日本RNA学会年会, 2017.07, Oral Presentation(general)

  • 深層学習によるRNA二次構造予測

    秋山真那斗,榊原康文,佐藤健吾

    第19回日本RNA学会年会, 2017.07, Poster (general)

  • 医師国家試験自動解答プログラムの治療薬問題への拡張

    水口達矢,伊藤詩乃,佐藤健吾,榊原康文

    第31回人工知能学会全国大会, 2017.05, Oral Presentation(general)

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Research Projects of Competitive Funds, etc. 【 Display / hide

  • GenomeGAN: 敵対的生成ネットワークによるインシリコゲノム合成

    2019.06
    -
    2021.03

    MEXT,JSPS, Grant-in-Aid for Scientific Research, 佐藤 健吾, Grant-in-Aid for Challenging Research (Exploratory) , Principal Investigator

  • RNA secondary structure prediction using nanopore sequencers

    2019.04
    -
    2022.03

    MEXT,JSPS, Grant-in-Aid for Scientific Research, 佐藤 健吾, Grant-in-Aid for Scientific Research (B), Principal Investigator

  • 次世代シークエンシングデータを利用した機械学習によるRNA二次構造予測の高精度化

    2016.04
    -
    2019.03

    MEXT,JSPS, Grant-in-Aid for Scientific Research, 佐藤 健吾, Grant-in-Aid for Scientific Research (C), Principal Investigator

Awards 【 Display / hide

  • ポスター賞

    Akiyama, M., Sakakibara, Y., Sato, K., 2017.09, 日本バイオインフォマティクス学会, RNA secondary structure prediction using deep learning

    Type of Award: Awards of National Conference, Council and Symposium

  • 研究奨励賞

    Akiyama, M., Sakakibara, Y., Sato, K., 2016.10, 日本バイオインフォマティクス学会, Improving RNA secondary structure prediction with weak label learning from NGS data

    Type of Award: Awards of National Conference, Council and Symposium

  • IPSJ Yamashita SIG Research Award

    Sato Kengo, 2013.03, 情報処理学会, RNA structural alignments via dual decomposition

    Type of Award: Awards of National Conference, Council and Symposium

  • Oxford University Press JSBi Prize

    Sato Kengo, 2008.12, 日本バイオインフォマティクス学会, A non-parametric Bayesian approach for predicting RNA secondary structures

    Type of Award: Awards of National Conference, Council and Symposium

 

Courses Taught 【 Display / hide

  • TOPICS IN BIOSCIENCES AND INFORMATICS 2

    2020

  • SEMINAR IN BIOSCIENCES AND INFORMATICS

    2020

  • MATHEMATICS FOR LIFE SCIENCES

    2020

  • INTRODUCTION TO BIOLOGY TODAY

    2020

  • COMPREHENSIVE EXERCISE FOR BIOSCIENCES & INFORMATICS 2

    2020

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Memberships in Academic Societies 【 Display / hide

  • Japan Society of Marmoset Research, 

    2013.10
    -
    Present
  • The RNA Society of Japan, 

    2011
    -
    Present
  • The Molecular Biology Society of Japan, 

    2008
    -
    Present
  • IPSJ SIGBIO, 

    2006.04
    -
    Present
  • International Society for Computational Biology, 

    2005
    -
    Present

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Committee Experiences 【 Display / hide

  • 2018.04
    -
    Present

    Steering Committee Member, IPSJ SIGBIO

  • 2018.04
    -
    2018.12

    Program Committee Co-Chair, International Conference on Genome Informatics (GIW) 2018

  • 2017.04
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    Present

    Editor, IPSJ Transactions on Bioinformatics

  • 2016.10
    -
    2018.01

    Local Organizing Committee Co-Chair, Asia Pacific Bioinformatics Conference (APBC) 2018

  • 2016.01
    -
    2016.10

    2016年度生命医薬情報学連合大会実行委員, 日本バイオインフォマティクス学会

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