論文 - 山本　詠士

Large-Scale FMO-MP2 Calculations of the Spike Protein Droplet Model

Doi, H; Nakano, T; Sakakura, K; Akisawa, K; Okuwaki, K; Hirano, Y; Yamamoto, E; Yasuoka, K; Ohshima, S; Katagiri, T; Mochizuki, Y

JOURNAL OF COMPUTATIONAL CHEMISTRY 46 （ 4 ）  2025年02月

ISSN  0192-8651

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TDP-43 multidomains and RNA modulate interactions and viscoelasticity in biomolecular condensates

Y Matsushita, I Yasuda, F Watanabe, E Yamamoto

arXiv preprint arXiv:2504.19790 2025年

Large‐Scale FMO‐MP2 Calculations of the Spike Protein Droplet Model

H Doi, T Nakano, K Sakakura, K Akisawa, K Okuwaki, Y Hirano, ...

Journal of Computational Chemistry 46 (4), e70052 2025年

FMO-based interaction analysis on DEET/icaridin—AgamOBP1 complex

K Akisawa, Y Sakuma, A Tsukamoto, H Doi, K Okuwaki, Y Hirano, ...

Chemistry Letters 54 (2), upaf030 2025年

Discovery of Pseudo-Luciferase Activity in Immunoglobulin G (IgG) and Its Application to the Detection of IgG Denaturation

R Nishihara, Y Kihara, E Yamamoto, Y Hirano, R Kurita

Analytical Chemistry 2025年

Coarse-grained model of disordered RNA for simulations of biomolecular condensates

I Yasuda, S von Bülow, G Tesei, E Yamamoto, K Yasuoka, ...

Journal of chemical theory and computation 21 (5), 2766-2779 21 （ 5 ） 2766 - 2779 2025年

ISSN  1549-9618

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BPS2025-Reentrant phase behavior and selective partitioning in protein-RNA condensates using molecular dynamics simulation

I Yasuda, S Bülow, G Tesei, E Yamamoto, K Yasuoka, K Lindorff-Larsen

Biophysical Journal 124 (3), 29a-30a 2025年

Water structures in tip-charged carbon nanotubes

Y Ono, E Yamamoto, K Yasuoka

The Journal of Chemical Physics 161 (5) 161 （ 5 ）  2024年

ISSN  0021-9606

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Molecular dynamics study on the permeation directionality of water molecules through AQP4

N Kuribayashi, E Yamamoto, Y Hirano, K Yasuoka

Biophysical Journal 123 (3), 66a-67a 123 （ 3 ） 66A - 67A 2024年

ISSN  0006-3495

Statistical Interaction Analyses on AgamOBP1-DEET/Icaridin Complex

K Akisawa, Y Sakuma, A Tsukamoto, H Doi, K Okuwaki, Y Hirano, ...

2024年

Estimating relaxation times from a single trajectory

T Akimoto, E Yamamoto, T Uneyama

Journal of the Physical Society of Japan 92 (7), 074005 92 （ 7 ）  2023年

ISSN  0031-9015

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Tunable pheromone interactions among microswimmers

B Nakayama, H Nagase, H Takahashi, Y Saito, S Hatayama, K Makino, ...

Proceedings of the National Academy of Sciences 120 (9), e2213713120 120 （ 9 ）  2023年

ISSN  0027-8424

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Heterogeneous biological membranes regulate protein partitioning via fluctuating diffusivity

K Sakamoto, T Akimoto, M Muramatsu, MSP Sansom, R Metzler, ...

PNAS nexus 2 (8), pgad258 2 （ 8 ）  2023年

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Wetting hysteresis induces effective unidirectional water transport through a fluctuating nanochannel

N Arai, E Yamamoto, T Koishi, Y Hirano, K Yasuoka, T Ebisuzaki

arXiv preprint arXiv:2204.09251 8 （ 5 ） 652 - 661 2022年

ISSN  2055-6756

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Differences in ligand-induced protein dynamics extracted from an unsupervised deep learning approach correlate with protein–ligand binding affinities

I Yasuda, K Endo, E Yamamoto, Y Hirano, K Yasuoka

Communications Biology 5 (1), 1-9 2022年

Theoretical Design of a Janus-Nanoparticle-Based Sandwich Assay for Nucleic Acids

T Sato, K Esashika, E Yamamoto, T Saiki, N Arai

International Journal of Molecular Sciences 23 (15), 8807 23 （ 15 ）  2022年

ISSN  1661-6596

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Ligand-induced protein dynamics differences correlate with protein-ligand binding affinities: An unsupervised deep learning approach

I Yasuda, K Endo, E Yamamoto, Y Hirano, K Yasuoka

arXiv preprint arXiv:2109.01339 2021年

Water molecules in CNT–Si3N4 membrane: Properties and the separation effect for water–alcohol solution

Winarto, E Yamamoto, K Yasuoka

The Journal of Chemical Physics 155 (10), 104701 2021年

The Acidic Tail of HMGB1 Regulates its Secondary Structure and Conformational Flexibility: A Circular Dichroism and Molecular Dynamics Simulation Study

WL Anggayasti, K Ogino, E Yamamoto, E Helmerhorst, K Yasuoka, ...

Computational and Structural Biotechnology Journal 18   1160 - 1172 2020年

ISSN  2001-0370

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Multiple lipid binding sites determine the affinity of PH domains for phosphoinositide-containing membranes

E Yamamoto, J Domański, FB Naughton, RB Best, AC Kalli, PJ Stansfeld, ...

Science Advances 6 (8), eaay5736 6 （ 8 ）  2020年

ISSN  2375-2548

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